What Episodes Are Commonly Misinterpreted?

I know that some have accused "Board Girls" of transphobia, when in reality, that episode was just pointing out that cis women don't stand a fair chance against trans women. The episode itself explicitly states this, when even the usually overly protective PC Principal has the sense to acknowledge this reality; male puberty is permanent.

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Are there any other episodes with political or societal takes that people missed or didn't properly interpret?