When does it get a cohesive story?

Hi! Newer Magnus archives fan here. Just wondering, as Google doesn’t seem to have an answer for me, when does the Magnus archives start having, like, a solid storyline to it? Don’t get me wrong I love the short stories, but I’ve seen so many things about different characters etc and want to be involved in the conversation! When i listened to that episode with the girl called Naomi (I think that was her name) it gave me hope, but still john is the only character.

Sorry for that yap, but yeah, when does the story story start? Or is it only the Magnus protocol that has a story? Thanks! :D